PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016454.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 548aa    MW: 59528.8 Da    PI: 5.7333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016454.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12398443555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Do016454.1 398 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 443
                 99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17391453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-13391447No hitNo description
PROSITE profilePS5088817.212393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17395452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-9398443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14399448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAGGELMMSR HQPHQACGHR SPEFHCTQSY TKASITNLST VDIFSLQKPF FEEHFGKRLR  60
VPFLLVNMDY SAGSYFSSWP VNSASESYSL ADGSVESFGG EGSMPPSSYF MTARSDQTLK  120
FSGHEQESTM HTNEQLTYTG TGNADLLPAE ILSGDKLPEN LLELQRLQNN GNLQSNLVNP  180
GVLQHTTMPG GFHPQLNTSG LSEMPHALSS SIDSNSSEVS AFLTDVNAVS SVSTLCPTFQ  240
NPSSFLEPLN LEAFSFQGAQ NDTIWNKRSH PNGNMPVFDN AALASLNDSK EFISSKLPSF  300
ASVQETNLAA SGFKTQKQEP NPMCNVPIPT FTARNQMAVT ATQGQQIPQK MPSWINENKS  360
ECPVSHPSDV QTQANSAGNG VGVKPRVRAR RGQATDPHSI AERLRREKIS DRMKNLQDLV  420
PNSNKADKAS MLDEIIDYVK FLQLQVKVLS MSRLGAPGAV LPLLAESQTE GCHSQPLSAP  480
ANARGLLDVQ DTEDALAFEE EVVKLMETSI TSAMQYLQNK GLCLMPVALA SAISTQKGVP  540
AAAICPER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964606.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLK3XWM40.0K3XWM4_SETIT; Uncharacterized protein
STRINGSi006332m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.15e-53LJRHL1-like 2